Detailed information of matrix profile MA0554.1

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Profile summary
Name: SOC1
Matrix ID: MA0554.1
Class: MADS box factors
Family:
Collection: CORE
Taxon: Plants
Species: Arabidopsis thaliana
Data Type: ChIP-chip
Validation: 8774892
Uniprot ID: O64645  
Pazar TF:
TFBSshape ID: 353
TFencyclopedia IDs:
Source:
Comment:

Sequence logo

Frequency matrix

         
A [ 288 172 65 62 117 20 0 459 137 130 22 98 90 181 17 ]
C [ 123 264 27 0 47 855 617 37 78 6 8 24 71 10 23 ]
G [ 99 113 34 51 89 13 9 56 0 0 0 0 86 683 665 ]
T [ 378 339 762 775 635 0 262 336 673 752 858 766 641 14 183 ]

Binding sites information

   

TFBS profiles

External links

         
Matrix ID Base ID Version Name Species Family Class Sequence logo
MA0554.1 MA0554 1 SOC1 Arabidopsis thaliana
MADS box factors
     
There is no centrality information of the model.
TFFM first order profile doesn't exist for this profile.
TFFM detailed profile doesn't exist for this profile.

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: