Detailed information of matrix profile MA0467.1

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Profile summary
Name: Crx
Matrix ID: MA0467.1
Class: Homeo domain factors
Family: Paired-related HD factors
Collection: CORE
Taxon: Vertebrates
Species: Mus musculus
Data Type: ChIP-seq
Validation: 20463752
Uniprot ID: O54751  
Pazar TF:
TFBSshape ID: 271
TFencyclopedia IDs: 612
Source: PAZAR
Comment:

Sequence logo

Frequency matrix

         
A [ 1207 1454 347 943 515 0 1632 0 0 1995 544 ]
C [ 297 43 55 222 0 0 465 0 29 0 52 ]
G [ 458 417 1470 823 1574 2097 0 0 0 0 1326 ]
T [ 135 183 225 109 8 0 0 2097 2068 102 175 ]

Binding sites information

   

TFBS profiles

External links

              
Matrix ID Base ID Version Name Species Family Class Sequence logo
MA0467.1 MA0467 1 Crx Mus musculus
Paired-related HD factors Homeo domain factors
     

log(P-value) = -2852

TFFM details

TFFM ID: TFFM0013.1

ChIP-seq Centrality
log(P-value): -2863.94

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0013.1

ChIP-seq Centrality
log(P-value): -2602.86

TFFM detailed summary logos

Description: cone-rod homeobox

Alias: CRD,LCA7,OTX3

Symbol: CRX

Consensus:

Included Models:

GC Content: