Detailed information of matrix profile MA0465.1

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Profile summary
Name: CDX2
Matrix ID: MA0465.1
Class: Homeo domain factors
Family: HOX-related factors
Collection: CORE
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Validation: 20696899
Uniprot ID: Q99626  
Pazar TF: TF0000770
TFBSshape ID: 269
TFencyclopedia IDs: 526
Source: PAZAR
Comment:

Sequence logo

Frequency matrix

         
A [ 613 665 308 0 697 1597 0 1597 1597 1597 1013 ]
C [ 319 8 136 1048 832 0 0 0 0 0 150 ]
G [ 480 502 1153 0 0 0 0 0 0 0 313 ]
T [ 185 422 0 549 68 0 1597 0 0 0 121 ]

Binding sites information

   

TFBS profiles

External links

                   
Matrix ID Base ID Version Name Species Family Class Sequence logo
MA0465.1 MA0465 1 CDX2 Homo sapiens
HOX-related factors Homeo domain factors
     

log(P-value) = -598

TFFM details

TFFM ID: TFFM0008.1

ChIP-seq Centrality
log(P-value): -1826.5

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0008.1

ChIP-seq Centrality
log(P-value): -758.187

TFFM detailed summary logos

Description: caudal type homeobox 2

Alias: -

Symbol: CDX2

Consensus:

Included Models:

GC Content: