Detailed information of matrix profile MA0108.2

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Profile summary
Name: TBP
Matrix ID: MA0108.2
Class: TATA-binding proteins
Family: TBP-related factors
Collection: CORE
Taxon: Vertebrates
Species:
Data Type:
Validation: 2329577
Uniprot ID: P20226  
Pazar TF:
TFBSshape ID:
TFencyclopedia IDs:
Source:
Comment: column 7 error fixed in version 2

Sequence logo

Frequency matrix

         
A [ 61 16 352 3 354 268 360 222 155 56 83 82 82 68 77 ]
C [ 145 46 0 10 0 0 3 2 44 135 147 127 118 107 101 ]
G [ 152 18 2 2 5 0 20 44 157 150 128 128 128 139 140 ]
T [ 31 309 35 374 30 121 6 121 33 48 31 52 61 75 71 ]

Binding sites information

No Binding sites available for this model.

TFBS profiles

No TFBSshape profile for this model.

External links

         
Matrix ID Base ID Version Name Species Family Class Sequence logo
MA0108.1 MA0108 1 TBP TBP-related factors TATA-binding proteins
MA0108.2 MA0108 2 TBP TBP-related factors TATA-binding proteins
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0106.1

ChIP-seq Centrality
log(P-value): -202.328

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0106.1

ChIP-seq Centrality
log(P-value): -164.002

TFFM detailed summary logos

Description: TATA box binding protein

Alias: TFIID

Symbol: TBP

Consensus:

Included Models:

GC Content: