Detailed information of matrix profile MA0108.2

  1. Home
  2. Matrix > MA0108.2

Profile summary
Name: TBP
Matrix ID: MA0108.2
Class: TATA-binding proteins
Family: TBP-related factors
Collection: CORE
Taxon: Vertebrates
Species:
Data Type:
Validation: 2329577
Uniprot ID: P20226  
Source:
Comment: column 7 error fixed in version 2

Sequence logo

Frequency matrix

         
A [ 61 16 352 3 354 268 360 222 155 56 83 82 82 68 77 ]
C [ 145 46 0 10 0 0 3 2 44 135 147 127 118 107 101 ]
G [ 152 18 2 2 5 0 20 44 157 150 128 128 128 139 140 ]
T [ 31 309 35 374 30 121 6 121 33 48 31 52 61 75 71 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA0108.1 MA0108 1 TBP TBP-related factors TATA-binding proteins
MA0108.2 MA0108 2 TBP TBP-related factors TATA-binding proteins
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0106.1

ChIP-seq Centrality
log(P-value): -202.328

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0106.1

ChIP-seq Centrality
log(P-value): -164.002

TFFM detailed summary logos

Description: TATA box binding protein

Alias: TFIID

Symbol: TBP

Consensus:

Included Models:

GC Content: