Detailed information of matrix profile MA0083.1

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Profile summary
Name: SRF
Matrix ID: MA0083.1
Class: MADS box factors
Family: Responders to external signals (SRF/RLM1)
Collection: CORE
Taxon: Vertebrates
Species: Homo sapiens
Data Type: SELEX
Validation: 2243767
Uniprot ID: P11831  
Pazar TF: TF0000058
TFBSshape ID:
TFencyclopedia IDs: 153
Source:
Comment: -

Sequence logo

Frequency matrix

         
A [ 2 9 0 1 32 3 46 1 43 15 2 2 ]
C [ 1 33 45 45 1 1 0 0 0 1 0 1 ]
G [ 39 2 1 0 0 0 0 0 0 0 44 43 ]
T [ 4 2 0 0 13 42 0 45 3 30 0 0 ]

Binding sites information

   

TFBS profiles

No TFBSshape profile for this model.

External links

                   
Matrix ID Base ID Version Name Species Family Class Sequence logo
MA0083.1 MA0083 1 SRF Homo sapiens
Responders to external signals (SRF/RLM1) MADS box factors
MA0083.2 MA0083 2 SRF Homo sapiens
Responders to external signals (SRF/RLM1) MADS box factors
MA0083.3 MA0083 3 SRF Homo sapiens
Responders to external signals (SRF/RLM1) MADS box factors
     
There is no centrality information of the model.
TFFM first order profile doesn't exist for this profile.
TFFM detailed profile doesn't exist for this profile.

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: