Detailed information of matrix profile MA0063.1

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Profile summary
Name: Nkx2-5
Matrix ID: MA0063.1
Class: Homeo domain factors
Family: NK-related factors
Collection: CORE
Taxon: Vertebrates
Species: Mus musculus
Data Type: SELEX
Validation: 7797561
Uniprot ID: P42582  
Pazar TF: TF0000040
TFBSshape ID: 64
TFencyclopedia IDs: 776
Source:
Comment: -

Sequence logo

Frequency matrix

         
A [ 7 0 17 17 0 4 2 ]
C [ 0 4 0 0 0 2 1 ]
G [ 1 0 0 0 7 0 11 ]
T [ 9 13 0 0 10 11 3 ]

Binding sites information

   

TFBS profiles

External links

                   
Matrix ID Base ID Version Name Species Family Class Sequence logo
MA0063.1 MA0063 1 Nkx2-5 Mus musculus
NK-related factors Homeo domain factors
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0076.1

ChIP-seq Centrality
log(P-value): -465.489

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0076.1

ChIP-seq Centrality
log(P-value): -568.695

TFFM detailed summary logos

Description: NK2 homeobox 5

Alias: CSX1,NKX2.5,NKX4-1

Symbol: NKX2-5

Consensus:

Included Models:

GC Content: