Detailed information of matrix profile MA0005.2

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Profile summary
Name: AG
Matrix ID: MA0005.2
Class: MADS box factors
Family:
Collection: CORE
Taxon: Plants
Species: Arabidopsis thaliana
Data Type: SELEX
Validation: 7901838
Uniprot ID: P17839  
Pazar TF:
TFBSshape ID:
TFencyclopedia IDs:
Source:
Comment:

Sequence logo

Frequency matrix

         
A [ 21 9 10 29 0 0 31 47 52 25 17 19 7 2 22 45 40 15 ]
C [ 20 3 0 8 66 65 3 2 0 0 15 8 0 0 17 4 6 10 ]
G [ 6 3 1 8 0 0 6 0 1 1 11 20 57 54 5 5 9 16 ]
T [ 19 51 55 21 0 1 26 17 13 40 23 19 2 10 22 12 11 25 ]

Binding sites information

No Binding sites available for this model.

TFBS profiles

No TFBSshape profile for this model.

External links

         
Matrix ID Base ID Version Name Species Family Class Sequence logo
MA0005.1 MA0005 1 AG Arabidopsis thaliana
MADS MADS box factors
MA0005.2 MA0005 2 AG Arabidopsis thaliana
MADS box factors
     
There is no centrality information of the model.
TFFM first order profile doesn't exist for this profile.
TFFM detailed profile doesn't exist for this profile.

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: