JASPAR RESTful API

This API provides an easy-to-use REST web interface to query/retrieve matrix profile data from the latest version of the JASPAR database. The API comes with a human browsable interface and also a programmatic interface which return the results in eight different formats, including json, jsonp, jaspar, meme, transfac, pfm, yaml and bed.

GET /api/v1/matrix/PF0108.1/?format=api

HTTP 200 OK
Allow: GET, HEAD, OPTIONS
Content-Type: application/json
Vary: Accept

{
    "name": "AACWWCAANK",
    "pazar_tf_id": [],
    "sequence_logo": "https://jaspar2018.genereg.net/static/logos/svg/PF0108.1.svg",
    "tfe_ids": [],
    "mcs": "12.7",
    "uniprot_ids": [],
    "transfac": "FAC1(*)",
    "species": [],
    "version": 1,
    "base_id": "PF0108",
    "pubmed_ids": [
        "15735639"
    ],
    "pfm": {
        "A": [
            604.0,
            604.0,
            0.0,
            128.0,
            510.0,
            0.0,
            604.0,
            604.0,
            157.0,
            0.0
        ],
        "G": [
            0.0,
            0.0,
            0.0,
            0.0,
            0.0,
            0.0,
            0.0,
            0.0,
            102.0,
            164.0
        ],
        "T": [
            0.0,
            0.0,
            0.0,
            476.0,
            94.0,
            0.0,
            0.0,
            0.0,
            118.0,
            440.0
        ],
        "C": [
            0.0,
            0.0,
            604.0,
            0.0,
            0.0,
            604.0,
            0.0,
            0.0,
            227.0,
            0.0
        ]
    },
    "tffm": null,
    "type": "phylogenetic",
    "tfe_id": [],
    "sites_url": null,
    "versions_url": "https://jaspar2018.genereg.net/api/v1/matrix/PF0108/versions",
    "pazar_tf_ids": [],
    "matrix_id": "PF0108.1",
    "family": [],
    "jaspar": "-",
    "collection": "PHYLOFACTS",
    "comment": "-",
    "class": [
        "Unknown"
    ],
    "medline": [
        "15735639"
    ],
    "tax_group": "vertebrates"
}

Matrix Details