Detailed information of matrix profile PH0109.1

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Profile summary
Name: Nkx1-1
Matrix ID: PH0109.1
Class: Helix-Turn-Helix
Family: Homeo
Collection: PBM_HOMEO
Taxon: Vertebrates
Species: Mus musculus
Data Type: universal protein binding microarray (PBM)
Validation: 18585359
Uniprot ID: O08713  
Source:
Comment: Data is from Uniprobe database

Sequence logo

Frequency matrix

         
A [ 18 19 9 11 47 5 1 88 95 4 0 58 19 4 13 4 46 ]
C [ 26 49 49 68 6 63 42 11 0 0 0 0 13 40 13 55 12 ]
G [ 20 16 31 10 46 13 0 0 0 0 11 42 63 20 48 25 7 ]
T [ 36 16 10 11 1 19 58 0 4 95 88 1 5 35 26 17 35 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
PH0109.1 PH0109 1 Nkx1-1 Mus musculus
Homeo Helix-Turn-Helix
     
There is no centrality information of the model.
TFFM first order profile doesn't exist for this profile.
TFFM detailed profile doesn't exist for this profile.

Description:

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GC Content: