Detailed information of matrix profile PH0087.1

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Profile summary
Name: Irx6
Matrix ID: PH0087.1
Class: Helix-Turn-Helix
Family: Homeo
Collection: PBM_HOMEO
Taxon: Vertebrates
Species: Mus musculus
Data Type: universal protein binding microarray (PBM)
Validation: 18585359
Uniprot ID: Q9ER75  
Source:
Comment: Data is from Uniprobe database

Sequence logo

Frequency matrix

         
A [ 74 25 30 28 18 20 95 1 95 3 3 3 76 24 32 21 34 ]
C [ 7 21 11 21 18 1 1 96 0 2 1 1 3 28 12 12 12 ]
G [ 6 22 11 10 27 3 1 1 2 0 96 1 1 16 16 13 18 ]
T [ 13 32 48 40 37 76 3 3 3 95 1 95 20 31 40 54 36 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
PH0087.1 PH0087 1 Irx6 Mus musculus
Homeo Helix-Turn-Helix
     
There is no centrality information of the model.
TFFM first order profile doesn't exist for this profile.
TFFM detailed profile doesn't exist for this profile.

Description:

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GC Content: