Detailed information of matrix profile PH0086.1

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Profile summary
Name: Irx5
Matrix ID: PH0086.1
Class: Helix-Turn-Helix
Family: Homeo
Collection: PBM_HOMEO
Taxon: Vertebrates
Species: Mus musculus
Data Type: universal protein binding microarray (PBM)
Validation: 18585359
Uniprot ID: Q9JKQ4  
Source:
Comment: Data is from Uniprobe database

Sequence logo

Frequency matrix

         
A [ 45 33 27 30 22 33 93 0 94 5 3 4 60 24 32 27 37 ]
C [ 13 25 12 21 20 1 2 96 0 1 1 1 7 21 20 19 15 ]
G [ 11 21 7 11 24 7 1 1 1 0 96 2 1 22 17 10 11 ]
T [ 30 21 54 38 35 60 4 3 5 94 0 93 33 33 31 44 37 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
PH0086.1 PH0086 1 Irx5 Mus musculus
Homeo Helix-Turn-Helix
     
There is no centrality information of the model.
TFFM first order profile doesn't exist for this profile.
TFFM detailed profile doesn't exist for this profile.

Description:

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GC Content: