Detailed information of matrix profile PH0040.1

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Profile summary
Name: Hmbox1
Matrix ID: PH0040.1
Class: Helix-Turn-Helix
Family: Homeo
Collection: PBM_HOMEO
Taxon: Vertebrates
Species: Mus musculus
Data Type: universal protein binding microarray (PBM)
Validation: 18585359
Uniprot ID: Q8BJA3  
Source:
Comment: Data is from Uniprobe database

Sequence logo

Frequency matrix

         
A [ 19 43 28 29 20 3 88 98 0 0 96 12 30 18 13 34 21 ]
C [ 31 20 26 14 10 2 0 1 99 29 3 2 14 22 34 10 30 ]
G [ 43 11 13 44 6 1 1 0 0 0 1 85 9 15 10 20 23 ]
T [ 7 25 33 13 64 94 11 0 1 70 1 1 47 46 44 37 25 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
PH0040.1 PH0040 1 Hmbox1 Mus musculus
Homeo Helix-Turn-Helix
     
There is no centrality information of the model.
TFFM first order profile doesn't exist for this profile.
TFFM detailed profile doesn't exist for this profile.

Description:

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GC Content: