Detailed information of matrix profile PB0070.1

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Profile summary
Name: Sox30_1
Matrix ID: PB0070.1
Class: Other Alpha-Helix
Family: High Mobility Group box (HMG)
Collection: PBM
Taxon: Vertebrates
Species: Mus musculus
Data Type: universal protein binding microarray (PBM)
Validation: 19443739
Uniprot ID: Q8CGW4  
Source:
Comment: Data is from Uniprobe database

Sequence logo

Frequency matrix

         
A [ 41 37 22 21 6 27 92 0 1 12 4 3 17 33 33 20 ]
C [ 17 18 15 15 51 47 1 2 0 1 0 20 44 29 16 32 ]
G [ 24 27 24 18 9 11 0 0 1 86 0 5 23 8 18 10 ]
T [ 18 19 39 46 33 16 7 98 98 0 96 72 16 29 33 37 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
PB0070.1 PB0070 1 Sox30_1 Mus musculus
High Mobility Group box (HMG) Other Alpha-Helix
     
There is no centrality information of the model.
TFFM first order profile doesn't exist for this profile.
TFFM detailed profile doesn't exist for this profile.

Description:

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GC Content: