# MATRIX_ANNOTATION

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  Annotations from PAZAR NFAT1_MOUSE + NFAT1_HUMAN + NFAT1_RAT (TF0000191, TF0000193, TF0000195) in the pleiades genes project.


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  Annotations from PAZAR NR4A2_MOUSE + NR4A2_RAT + NR4A2_HUMAN (TF0000135, TF0000153, TF0000157) in the pleiades genes project.


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VAL:
  Annotations from PAZAR CREB1_RAT + CREB1_HUMAN + CREB1_MOUSE in the pleiades genes project (TF0000110, TF0000150, TF0000732).


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VAL:
  Annotations from PAZAR SOX10_RAT + SOX10_HUMAN + SOX10_MOUSE (TF0000223, TF0000224, TF0000226) in the pleiades genes project.


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  Class and TF information is inferred from the human ortholog to EcR and usp, respectively, obtained from Flybase.


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  The profile has been trimmed to keep the core DNA-binding of the TF since the right part of the motif is bound by something we do not know.


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  This motif corresponds to the expected CREM motif, however the centrality log10(p-value) is 0 (even when the centrality is clear in the plot) because the dataset contains >100,00 peaks .


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  TF has several motif variants. The ab used for ChIP was done using recombinant protein containing regions shared by LEC1-A and LEC1-B. Therefore the profile could be for either or both LEC1-A and B.


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  Class and TF information inffered based on sequence similarity search using DELTA-BLAST within Nr. database and limiting the search to vertebrates


TAG: comment
VAL:
  Class and TF information inffered based on sequence similarity search using DELTA-BLAST within Nr. database and limiting the search to H. sapiens, R. norvegicus and M. musculusto shorten the hit list


TAG: comment
VAL:
  Class and TF information inffered based on sequence similarity search using DELTA-BLAST within Nr. database and limiting the search to H. sapiens.


