MEME version 4 ALPHABET= ACGT strands: + - Background letter frequencies A 0.25 C 0.25 G 0.25 T 0.25 MOTIF PF0082.1 CTGYNNCTYTAA letter-probability matrix: alength= 4 w= 12 nsites= 364 E= 0 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.445055 0.000000 0.554945 0.195055 0.497253 0.170330 0.137363 0.060440 0.478022 0.145604 0.315934 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.032967 0.000000 0.967033 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 URL http://jaspar.genereg.net/matrix/PF0082.1 MOTIF PF0029.1 CTTTAAR letter-probability matrix: alength= 4 w= 7 nsites= 3588 E= 0 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.555463 0.000000 0.444537 0.000000 URL http://jaspar.genereg.net/matrix/PF0029.1 MOTIF PF0073.1 CTTTGA letter-probability matrix: alength= 4 w= 6 nsites= 4260 E= 0 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 URL http://jaspar.genereg.net/matrix/PF0073.1 MOTIF PF0013.1 CTTTGT letter-probability matrix: alength= 4 w= 6 nsites= 9424 E= 0 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 URL http://jaspar.genereg.net/matrix/PF0013.1 MOTIF MA0287.1 CUP2 letter-probability matrix: alength= 4 w= 11 nsites= 9 E= 0 0.000000 0.777778 0.000000 0.222222 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.222222 0.777778 0.000000 0.000000 0.666667 0.000000 0.333333 0.000000 0.444444 0.111111 0.444444 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.777778 0.000000 0.222222 0.000000 0.444444 0.000000 0.000000 0.555556 0.222222 0.000000 0.777778 0.000000 URL http://jaspar.genereg.net/matrix/MA0287.1 MOTIF MA0288.1 CUP9 letter-probability matrix: alength= 4 w= 9 nsites= 99 E= 0 0.070707 0.101010 0.030303 0.797980 0.000000 0.000000 1.000000 0.000000 0.840000 0.000000 0.090000 0.070000 0.010000 0.990000 0.000000 0.000000 0.910000 0.000000 0.090000 0.000000 0.000000 0.640000 0.090000 0.270000 0.750000 0.150000 0.000000 0.100000 0.400000 0.000000 0.000000 0.600000 0.390000 0.130000 0.030000 0.450000 URL http://jaspar.genereg.net/matrix/MA0288.1 MOTIF MA0754.1 CUX1 letter-probability matrix: alength= 4 w= 10 nsites= 36808 E= 0 0.111362 0.126304 0.065230 0.697104 0.492401 0.063251 0.298407 0.145941 0.982087 0.004172 0.007349 0.006392 0.002720 0.011264 0.002950 0.983066 0.001935 0.973481 0.002011 0.022574 0.367712 0.010133 0.617165 0.004990 0.986126 0.001729 0.003267 0.008878 0.005784 0.003663 0.001118 0.989434 0.516091 0.189469 0.152058 0.142383 0.318329 0.297478 0.154254 0.229939 URL http://jaspar.genereg.net/matrix/MA0754.1 MOTIF MA0755.1 CUX2 letter-probability matrix: alength= 4 w= 10 nsites= 62500 E= 0 0.129776 0.073168 0.067952 0.729104 0.527657 0.058672 0.272507 0.141163 0.975698 0.005353 0.011562 0.007387 0.009902 0.038058 0.010026 0.942014 0.001592 0.980548 0.002023 0.015837 0.298161 0.004505 0.688779 0.008555 0.990803 0.001500 0.003544 0.004153 0.008551 0.006003 0.001425 0.984020 0.591936 0.152371 0.098554 0.157139 0.434694 0.209217 0.110950 0.245139 URL http://jaspar.genereg.net/matrix/MA0755.1 MOTIF PF0034.1 CYTAGCAAY letter-probability matrix: alength= 4 w= 9 nsites= 608 E= 0 0.000000 1.000000 0.000000 0.000000 0.000000 0.587171 0.000000 0.412829 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.967105 0.000000 0.032895 URL http://jaspar.genereg.net/matrix/PF0034.1 MOTIF PH0012.1 Cdx1 letter-probability matrix: alength= 4 w= 16 nsites= 100 E= 0 0.290000 0.150000 0.180000 0.380000 0.390000 0.100000 0.310000 0.200000 0.400000 0.250000 0.240000 0.110000 0.140000 0.060000 0.730000 0.070000 0.130000 0.030000 0.830000 0.010000 0.010000 0.280000 0.000000 0.710000 0.490000 0.470000 0.000000 0.040000 0.828283 0.000000 0.171717 0.000000 0.010000 0.000000 0.000000 0.990000 0.740000 0.010000 0.000000 0.250000 0.920000 0.000000 0.000000 0.080000 0.940000 0.010000 0.000000 0.050000 0.646465 0.111111 0.050505 0.191919 0.161616 0.232323 0.171717 0.434343 0.140000 0.110000 0.260000 0.490000 0.360000 0.210000 0.100000 0.330000 URL http://jaspar.genereg.net/matrix/PH0012.1