MEME version 4 ALPHABET= ACGT strands: + - Background letter frequencies A 0.25 C 0.25 G 0.25 T 0.25 MOTIF MA0072.1 RORA(var.2) letter-probability matrix: alength= 4 w= 14 nsites= 36 E= 0 0.250000 0.222222 0.222222 0.305556 0.472222 0.055556 0.194444 0.277778 0.416667 0.000000 0.083333 0.500000 0.972222 0.027778 0.000000 0.000000 0.638889 0.000000 0.000000 0.361111 0.055556 0.333333 0.361111 0.250000 0.000000 0.000000 0.000000 1.000000 0.777778 0.000000 0.222222 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.416667 0.166667 0.277778 0.138889 URL http://jaspar.genereg.net/matrix/MA0072.1 MOTIF MA1150.1 RORB letter-probability matrix: alength= 4 w= 11 nsites= 1000 E= 0 0.785000 0.014000 0.029000 0.172000 0.525475 0.025974 0.023976 0.424575 0.233233 0.162162 0.201201 0.403403 0.053000 0.165000 0.235000 0.547000 0.602000 0.014000 0.358000 0.026000 0.016000 0.025000 0.907000 0.052000 0.032000 0.013000 0.928000 0.027000 0.028000 0.146000 0.050000 0.776000 0.047000 0.781000 0.017000 0.155000 0.896000 0.015000 0.063000 0.026000 0.205000 0.326000 0.145000 0.324000 URL http://jaspar.genereg.net/matrix/MA1150.1 MOTIF MA1151.1 RORC letter-probability matrix: alength= 4 w= 12 nsites= 1000 E= 0 0.306000 0.179000 0.260000 0.255000 0.329000 0.114000 0.141000 0.416000 0.855000 0.014000 0.011000 0.120000 0.527000 0.010000 0.032000 0.431000 0.225000 0.249000 0.277000 0.249000 0.043043 0.087087 0.116116 0.753754 0.622378 0.023976 0.342657 0.010989 0.005000 0.002000 0.919000 0.074000 0.036036 0.003003 0.952953 0.008008 0.059000 0.112000 0.168000 0.661000 0.006000 0.822000 0.019000 0.153000 0.785000 0.012000 0.161000 0.042000 URL http://jaspar.genereg.net/matrix/MA1151.1 MOTIF MA0371.1 ROX1 letter-probability matrix: alength= 4 w= 12 nsites= 8 E= 0 0.000000 0.500000 0.000000 0.500000 0.000000 0.750000 0.000000 0.250000 0.250000 0.500000 0.000000 0.250000 0.875000 0.125000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.125000 0.875000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.625000 0.125000 0.250000 0.125000 0.000000 0.125000 0.750000 0.000000 0.625000 0.250000 0.125000 URL http://jaspar.genereg.net/matrix/MA0371.1 MOTIF MA0372.1 RPH1 letter-probability matrix: alength= 4 w= 8 nsites= 100 E= 0 0.530000 0.140000 0.140000 0.190000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.636364 0.010101 0.070707 0.282828 0.732673 0.069307 0.069307 0.128713 URL http://jaspar.genereg.net/matrix/MA0372.1 MOTIF MA0373.1 RPN4 letter-probability matrix: alength= 4 w= 7 nsites= 99 E= 0 0.232323 0.000000 0.676768 0.090909 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.120000 0.880000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.130000 0.000000 0.870000 0.000000 URL http://jaspar.genereg.net/matrix/MA0373.1 MOTIF PF0129.1 RRAGTTGT letter-probability matrix: alength= 4 w= 8 nsites= 888 E= 0 0.376126 0.000000 0.623874 0.000000 0.506757 0.000000 0.493243 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 URL http://jaspar.genereg.net/matrix/PF0129.1 MOTIF PF0146.1 RRCCGTTA letter-probability matrix: alength= 4 w= 8 nsites= 444 E= 0 0.349099 0.000000 0.650901 0.000000 0.468468 0.000000 0.531532 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 URL http://jaspar.genereg.net/matrix/PF0146.1 MOTIF MA0073.1 RREB1 letter-probability matrix: alength= 4 w= 20 nsites= 11 E= 0 0.272727 0.727273 0.000000 0.000000 0.090909 0.909091 0.000000 0.000000 0.272727 0.727273 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.636364 0.363636 0.000000 0.000000 0.818182 0.181818 0.000000 0.000000 0.727273 0.272727 0.000000 0.000000 0.363636 0.545455 0.000000 0.090909 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.363636 0.636364 0.000000 0.000000 0.090909 0.909091 0.000000 0.000000 0.272727 0.727273 0.000000 0.000000 0.363636 0.545455 0.090909 0.000000 0.181818 0.818182 0.000000 0.000000 0.363636 0.454545 0.000000 0.181818 0.363636 0.454545 0.090909 0.090909 0.363636 0.545455 0.000000 0.090909 0.090909 0.636364 0.272727 0.000000 0.363636 0.363636 0.181818 0.090909 URL http://jaspar.genereg.net/matrix/MA0073.1 MOTIF MA0374.1 RSC3 letter-probability matrix: alength= 4 w= 7 nsites= 100 E= 0 0.000000 0.910000 0.050000 0.040000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.060606 0.555556 0.181818 0.202020 0.190000 0.300000 0.370000 0.140000 0.227723 0.257426 0.336634 0.178218 URL http://jaspar.genereg.net/matrix/MA0374.1