Detailed information of matrix profile MA1069.1

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Profile summary
Name: TGA6
Matrix ID: MA1069.1
Class: Basic leucine zipper factors (bZIP)
Family:
Collection: CORE
Taxon: Plants
Species: Arabidopsis thaliana
Data Type: PBM
Validation: 8487298
Uniprot ID: Q39140  
Source: 25215497
Comment: Data is from PMID:25215497

Sequence logo

Frequency matrix

         
A [ 98 40 1000 0 0 0 0 1000 152 251 ]
C [ 138 84 0 1000 0 0 1000 0 209 330 ]
G [ 98 599 0 0 1000 0 0 0 211 210 ]
T [ 665 277 0 0 0 1000 0 0 428 210 ]

Binding sites information

   

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA1069.1 MA1069 1 TGA6 Arabidopsis thaliana
Basic leucine zipper factors (bZIP)
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0406.1

ChIP-seq Centrality
log(P-value): -25890.0

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0406.1

ChIP-seq Centrality
log(P-value): -26072.4

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: