Detailed information of matrix profile MA0872.1

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Profile summary
Name: TFAP2A(var.3)
Matrix ID: MA0872.1
Class: Basic helix-span-helix factors (bHSH)
Family: AP-2
Collection: CORE
Taxon: Vertebrates
Species: Homo sapiens
Data Type: HT-SELEX
Validation: 16420676
Uniprot ID: P05549  
Source: 23332764
Comment: Data is from Taipale HTSELEX DBD (2013)

Sequence logo

Frequency matrix

         
A [ 260 0 0 0 53 75 251 650 131 0 0 0 837 ]
C [ 198 366 1903 1911 1420 538 546 212 95 0 0 1359 134 ]
G [ 102 1099 0 0 66 224 506 524 1115 1373 1368 357 154 ]
T [ 721 0 0 0 192 556 188 55 48 0 0 0 262 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA0872.1 MA0872 1 TFAP2A(var.3) Homo sapiens
AP-2 Basic helix-span-helix factors (bHSH)
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0113.1

ChIP-seq Centrality
log(P-value): -5777.24

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0113.1

ChIP-seq Centrality
log(P-value): -5107.15

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: