Detailed information of matrix profile MA0810.1

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Profile summary
Name: TFAP2A(var.2)
Matrix ID: MA0810.1
Class: Basic helix-span-helix factors (bHSH)
Family: AP-2
Collection: CORE
Taxon: Vertebrates
Species: Homo sapiens
Data Type: HT-SELEX
Validation: 16420676
Uniprot ID: P05549  
Source: 23332764
Comment: Data is from Taipale HTSELEX DBD (2013)

Sequence logo

Frequency matrix

         
A [ 671 226 10 0 28 189 1324 963 33 0 147 1971 ]
C [ 979 468 4006 4006 1873 1054 831 221 10 229 4006 173 ]
G [ 434 4006 788 34 407 1439 1653 2812 4006 4006 1906 1183 ]
T [ 1922 101 5 191 1697 1324 197 10 0 15 838 678 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA0810.1 MA0810 1 TFAP2A(var.2) Homo sapiens
AP-2 Basic helix-span-helix factors (bHSH)
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0112.1

ChIP-seq Centrality
log(P-value): -4469.25

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0112.1

ChIP-seq Centrality
log(P-value): -4263.98

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: