Detailed information of matrix profile MA0509.1

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Profile summary
Name: Rfx1
Matrix ID: MA0509.1
Class: Fork head / winged helix factors
Family: RFX-related factors
Collection: CORE
Taxon: Vertebrates
Species: Mus musculus
Data Type: ChIP-seq
Validation: 20189986
Uniprot ID: P48377  
Source: PAZAR
Comment:

Sequence logo

Frequency matrix

         
A [ 0 0 101 129 0 0 1789 409 90 257 522 1029 1481 159 ]
C [ 0 56 244 12 1952 1534 96 73 0 96 762 131 377 1532 ]
G [ 2138 0 0 1710 0 0 115 402 2048 1748 433 833 222 157 ]
T [ 0 2082 1793 287 186 604 138 1254 0 37 421 145 58 290 ]

Binding sites information

   

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA0509.1 MA0509 1 Rfx1 Mus musculus
RFX-related factors Fork head / winged helix factors
     

log(P-value) = -1359

TFFM details

TFFM ID: TFFM0089.1

ChIP-seq Centrality
log(P-value): -549.083

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0089.1

ChIP-seq Centrality
log(P-value): -545.375

TFFM detailed summary logos

Description: regulatory factor X,1 (influences HLA class II expression)

Alias: EF-C

Symbol: RFX1

Consensus:

Included Models:

GC Content: