Detailed information of matrix profile MA0503.1

  1. Home
  2. Matrix > MA0503.1

Profile summary
Name: Nkx2-5(var.2)
Matrix ID: MA0503.1
Class: Homeo domain factors
Family: NK-related factors
Collection: CORE
Taxon: Vertebrates
Species: Mus musculus
Data Type: ChIP-seq
Validation: 7797561
Uniprot ID: P42582  
Source: PAZAR
Comment:

Sequence logo

Frequency matrix

         
A [ 176 336 140 38 3429 0 956 0 16 488 491 ]
C [ 1795 825 0 0 0 0 0 0 1292 1467 821 ]
G [ 956 3 431 3391 0 3429 6 3429 1777 192 327 ]
T [ 502 2265 2858 0 0 0 2467 0 344 1282 1790 ]

Binding sites information

   

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA0503.1 MA0503 1 Nkx2-5(var.2) Mus musculus
NK-related factors Homeo domain factors
     

log(P-value) = -1814

TFFM details

TFFM ID: TFFM0077.1

ChIP-seq Centrality
log(P-value): -1925.88

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0077.1

ChIP-seq Centrality
log(P-value): -1853.53

TFFM detailed summary logos

Description: NK2 homeobox 5

Alias: CSX1,NKX2.5,NKX4-1

Symbol: NKX2-5

Consensus:

Included Models:

GC Content: