Detailed information of matrix profile MA0088.2

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Profile summary
Name: ZNF143
Matrix ID: MA0088.2
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc finger factors
Collection: CORE
Taxon: Vertebrates
Species: Homo sapiens
Data Type: HT-SELEX
Validation: 9009278
Uniprot ID: P52747  
Source: 23332764
Comment: Data is from Taipale HTSELEX DBD (2013)

Sequence logo

Frequency matrix

         
A [ 120 1199 1080 27 0 9 1609 1 0 686 3 0 0 1 652 1285 ]
C [ 1518 13 15 3 0 1553 1 67 310 61 4 0 0 1 13 153 ]
G [ 21 1138 1067 153 1609 36 0 0 143 917 0 1609 1609 1590 0 509 ]
T [ 382 102 345 1503 0 59 6 1572 1295 0 1609 0 2 21 949 87 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA0088.1 MA0088 1 znf143 Xenopus laevis
More than 3 adjacent zinc finger factors C2H2 zinc finger factors
MA0088.2 MA0088 2 ZNF143 Homo sapiens
More than 3 adjacent zinc finger factors C2H2 zinc finger factors
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0129.1

ChIP-seq Centrality
log(P-value): -800.461

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0129.1

ChIP-seq Centrality
log(P-value): -792.625

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: