JASPAR RESTful API

This API provides an easy-to-use REST web interface to query/retrieve matrix profile data from the latest version of the JASPAR database. The API comes with a human browsable interface and also a programmatic interface which return the results in eight different formats, including json, jsonp, jaspar, meme, transfac, pfm, yaml and bed.

GET /api/v1/matrix/MA0001.1.api

HTTP 200 OK
Allow: GET, HEAD, OPTIONS
Content-Type: application/json
Vary: Accept

{
    "collection": "CORE",
    "medline": [
        "7632923"
    ],
    "tfe_ids": [],
    "tax_group": "plants",
    "sequence_logo": "https://jaspar2018.genereg.net/static/logos/svg/MA0001.1.svg",
    "pfm": {
        "A": [
            0.0,
            3.0,
            79.0,
            40.0,
            66.0,
            48.0,
            65.0,
            11.0,
            65.0,
            0.0
        ],
        "T": [
            2.0,
            19.0,
            11.0,
            50.0,
            29.0,
            47.0,
            22.0,
            81.0,
            1.0,
            6.0
        ],
        "G": [
            1.0,
            0.0,
            3.0,
            4.0,
            1.0,
            0.0,
            5.0,
            3.0,
            28.0,
            88.0
        ],
        "C": [
            94.0,
            75.0,
            4.0,
            3.0,
            1.0,
            2.0,
            5.0,
            2.0,
            3.0,
            3.0
        ]
    },
    "name": "AGL3",
    "family": [
        "MADS"
    ],
    "type": "SELEX",
    "class": [
        "MADS box factors"
    ],
    "versions_url": "https://jaspar2018.genereg.net/api/v1/matrix/MA0001/versions",
    "base_id": "MA0001",
    "tfbs_shape_id": "10",
    "tffm": null,
    "version": 1,
    "pubmed_ids": [
        "7632923"
    ],
    "pazar_tf_ids": [],
    "sites_url": null,
    "tfe_id": [],
    "matrix_id": "MA0001.1",
    "comment": "-",
    "pazar_tf_id": [],
    "uniprot_ids": [
        "P29383"
    ],
    "species": [
        {
            "name": "Arabidopsis thaliana",
            "tax_id": 3702
        }
    ]
}

Matrix Details